Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs9769403 chr7:105163091 G/A 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs9791310 chr6:147391341 G/A 2.13E-8 175 25.67 19.72 8.67 KM Plot
PCPG rs9808363 chr2:114407835 A/C 0.000352 174 25.28 27.27 8.9 KM Plot
PCPG rs9833952 chr3:136662603 G/A 0.000469 177 22.15 27.33 23.03 KM Plot
PCPG rs9841643 chr3:122261307 G/A 7.7E-11 175 24.85 25.97 5.8 KM Plot
PCPG rs9841726 chr3:53515794 T/C 0.00026 170 25.67 20.2 31.43 KM Plot
PCPG rs9841897 chr3:122282569 T/C 9.44E-5 174 25 28.93 10.3 KM Plot
PCPG rs9842425 chr3:80513710 T/C 8.22E-5 174 19.87 24.03 25.67 KM Plot
PCPG rs9851562 chr3:195731741 G/A 1.24E-5 177 24.52 31.47 13.38 KM Plot
PCPG rs9859051 chr3:80396096 G/A 5.33E-7 175 25.77 23.48 19.87 KM Plot
PCPG rs9861150 chr3:136183320 G/T 0.000157 170 24.1 25.87 26.27 KM Plot
PCPG rs9861517 chr3:122261379 T/C 7.7E-11 175 24.85 25.97 5.8 KM Plot
PCPG rs9865208 chr3:147819531 T/A 0.000219 170 25.77 25.92 19.15 KM Plot
PCPG rs9867435 chr3:80407418 G/A 6.03E-7 174 25.67 23.48 19.87 KM Plot
PCPG rs9874186 chr3:80581713 A/C 5.68E-5 172 25.17 23.53 27.4 KM Plot